Final overall standings (top 20) for Men’s Skeleton in the 2012/2013 FIBT World Cup season. Not included are the results from the World Championships in St. Moritz, which do not count for the season-long tally.
| Pos | Name | Nation | Avg | Best | Points |
| 1 | Martins Dukurs | LAT | 1.11 | 1 | 2010 |
| 2 | Tomass Dukurs | LAT | 3.78 | 2 | 1746 |
| 3 | Alexander Kroeckel | GER | 5.33 | 2 | 1636 |
| 4 | Alexander Tretjyakov *^ | RUS | 2.63 | 2 | 1632 |
| 5 | Frank Rommel # * | GER | 4.75 | 1 | 1499 |
| 6 | Eric Neilson | CAN | 7.88 | 5 | 1368 |
| 7 | Kristan Bromley | GBR | 9.11 | 4 | 1360 |
| 8 | Christopher Grotheer* | GER | 8.75 | 3 | 1232 |
| 9 | John Daly | USA | 11.22 | 4 | 1214 |
| 10 | Jon Montgomery | CAN | 12.33 | 6 | 1160 |
| 11 | John Fairbairn | CAN | 12.22 | 8 | 1136 |
| 12 | Matthew Antoine* | USA | 12.63 | 7 | 984 |
| 13 | Ed Smith | GBR | 14.44 | 10 | 978 |
| 14 | Sergei Chudinov *** | RUS | 8.50 | 4 | 936 |
| 15 | Hiroatsu Takahashi | JPN | 15.67 | 11 | 896 |
| 16 | Ben Sandford # *** | NZL | 10.33 | 8 | 852 |
| 17 | Kyle Tress | USA | 16.78 | 5 | 839 |
| 18 | Matthias Guggenberger | AUT | 17.78 | 10 | 762 |
| 19 | Maurizio Oioli ** | ITA | 14.71 | 9 | 752 |
| 20 | Raphael Maier * | AUT | 16.63 | 11 | 740 |
| * Out of 8 races | |||||
| ** Out of 7 races | |||||
| *** Out of 6 races | |||||
| # Disqualified in one race, no finish recorded | |||||
| ^ World Championship winner | |||||